YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77404219, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHKGPAVA QGNGAPASNR AADTVELAEL GPLLEEKGKR AVTSPTKAEE EQACPGPQEE  60
   61 EEEVRVLTLP LQAHHAMEKM EEFVYKVWEG RWRVIPYDVL PDWLKDNDYL LHGHRPPMPS 120
  121 FRACFRSIFR IHTETGNIWT HLLGFVLFLF LGILTMLRPN MYFMAPLQEK VVFGMFFLGA 180
  181 VLCLSFSWLF HTVYCHSEKV SRTFSKLDYS GIALLIMGSF VPWLYYSFYC SPQPRLIYLS 240
  241 IVCVLGISAI IVAQWDRFAT PKHRQTRAGV FLGLGLSGVV PTMHFTIAEG FVKATTVGQM 300
  301 GWFFLMAVMY ITGAGLYAAR IPERFFPGKF DIWFQSHQIF HVLVVAAAFV HFYGVSNLQE 360
  361 FRYGLEGGCT DDSLL

Type	Start	End	Confidence
Cytoplasmic	1	136	0.99
Transmembrane Helix	137	157	0.93
Non-Cytoplasmic	158	171	0.89
Transmembrane Helix	172	194	0.90
Cytoplasmic	195	206	0.90
Transmembrane Helix	207	226	0.93
Non-Cytoplasmic	227	235	0.78
Transmembrane Helix	236	255	0.96
Cytoplasmic	256	267	0.84
Transmembrane Helix	268	288	0.94
Non-Cytoplasmic	289	299	0.82
Transmembrane Helix	300	319	0.95
Cytoplasmic	320	336	0.83
Transmembrane Helix	337	355	0.91
Non-Cytoplasmic	356	375	0.95