YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF5_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFDNLNTD FYQTSYSIDD QSQQSYDYGG SGGPYSKQYA GYDYSHQGRF VPADMMQPQQ  60
   61 PYTGQIFQPT QTYTPTTPQP FYGNNFEDEP PLLEELGINF DHIWQKTLTV LHPLKVADGS 120
  121 IMNETDLAGP MVFCLAFGAT LLLAGKIQFG YVYGISAIGC LGMFCLLNLM SMTGVSFGCV 180
  181 ASVLGYCLLP MILLSSFAVI FSLQGMVGII LTAGIIGWCS FSASKIFISA LAMEGQQLLV 240
  241 AYPCALLYGV FALISVF

Type	Start	End	Confidence
Cytoplasmic	1	126	0.94
Transmembrane Helix	127	144	0.90
Non-Cytoplasmic	145	150	0.64
Transmembrane Helix	151	170	0.90
Cytoplasmic	171	176	0.64
Transmembrane Helix	177	201	0.82
Non-Cytoplasmic	202	206	0.60
Transmembrane Helix	207	228	0.87
Cytoplasmic	229	237	0.76
Transmembrane Helix	238	256	0.91
Non-Cytoplasmic	257	257	0.87