YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68555006, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.70
Transmembrane Helix	18	37	0.90
Cytoplasmic	38	44	0.58
Transmembrane Helix	45	63	0.72
Non-Cytoplasmic	64	70	0.84
Transmembrane Helix	71	91	0.92
Cytoplasmic	92	98	0.92
Transmembrane Helix	99	121	0.92
Non-Cytoplasmic	122	127	0.85
Transmembrane Helix	128	149	0.90
Cytoplasmic	150	165	0.88
Transmembrane Helix	166	187	0.92
Non-Cytoplasmic	188	193	0.89
Transmembrane Helix	194	216	0.92
Cytoplasmic	217	234	0.89
Transmembrane Helix	235	251	0.93
Non-Cytoplasmic	252	255	0.65
Transmembrane Helix	256	274	0.79
Cytoplasmic	275	284	0.69
Transmembrane Helix	285	306	0.80
Non-Cytoplasmic	307	310	0.71
Transmembrane Helix	311	332	0.91
Cytoplasmic	333	340	0.71
Transmembrane Helix	341	363	0.77
Non-Cytoplasmic	364	371	0.74
Transmembrane Helix	372	392	0.93
Cytoplasmic	393	674	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRRACLAG TFQSPMHSPL ELTLVLLAAA VFGVVAFRML QLPPMLGYLA VGILIGPHAL  60
   61 GLASDSGQTK YLAEFGVVFL MFSIGLEFSL AKLRAMKRLV FGLGGSQVIL SMLAVVPASW 120
  121 MFNWLFPLSW QASVALGGAL AMSSTAIVSK MLSERMELES EHGRNIISIL LFQDLAVVPL 180
  181 LIVIPALSRD PGDLAFALGL ATVKIAVALG AIFFLGQRLM SRWFHVVAAR RSQELFMLNL 240
  241 LLVTLGMAAL TERLGLSMAL GAFMAGMLIS ETPYRHQVEE DIKPFRDVLL GLFFVTIGML 300
  301 LNIRVVFDHV WLVLALLIVP ILFKLVLIAV LARLFGSRQG VAIRTGLGLA QAGEFGFVLL 360
  361 NQIDGMGLVD PVLIQVILAS MLLSMLAAPF LIQYSDAIVL RFAANEWLLQ SLNMTRIAAQ 420
  421 SLQTEKHAII CGYGRSGQNL AHMLEREGIT YVALDLDPDR VRDAAAAGDT VVYGDAGRRE 480
  481 ALIAAGIHRA ALVVVTYANT PSAVKVLHHV QELAPALPVL VRTVDDSELD ILQKAGATEV 540
  541 VPEIIEGSLM LASHALVLLG VPMRRVVRGV QQARDARYSL LRGYFHGRDD EEDMVERDTV 600
  601 RLHAVSLGPE HTAVGRRLGA LGLERIGVEV TAVRRRGIRA FDPEPDTVLE PGDIVVLRGT 660
  661 PEALESAEER LIKD