YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58000444, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPELLLDS SIRFWVVLPI VFITFFVGVL RHYITKLIHN EKKVDLQQVS DSQVLLRSRI  60
   61 LRENGKYLPK QSFAMRKHYF NNPETGFFKK VKRKVTPKNP MTDPSMLTDM MKGNLTNVLP 120
  121 MILIGGWINW AFSGFLTTKV PFPLTLRFKP MLQRGIELVS LDASWVSSAS WYFLNVFGLR 180
  181 SMYTLILGQD NAADQSRIMQ DQMTGAAMAM PPDPNKAFKS EWEALEIVEH KWALENVEEE 240
  241 LMCQDLNFRE LFN

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.85
Transmembrane Helix	12	34	0.89
Cytoplasmic	35	114	0.87
Transmembrane Helix	115	136	0.86
Non-Cytoplasmic	137	160	0.77
Transmembrane Helix	161	179	0.56
Cytoplasmic	180	253	0.67