YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	28	0.96
Non-Cytoplasmic	29	47	0.91
Transmembrane Helix	48	68	0.92
Cytoplasmic	69	74	0.85
Transmembrane Helix	75	95	0.91
Non-Cytoplasmic	96	101	0.70
Transmembrane Helix	102	122	0.91
Cytoplasmic	123	142	0.83
Transmembrane Helix	143	163	0.89
Non-Cytoplasmic	164	185	0.93
Transmembrane Helix	186	206	0.92
Cytoplasmic	207	235	0.95
Transmembrane Helix	236	258	0.86
Non-Cytoplasmic	259	272	0.83
Transmembrane Helix	273	292	0.94
Cytoplasmic	293	302	0.90
Transmembrane Helix	303	321	0.97
Non-Cytoplasmic	322	327	0.70
Transmembrane Helix	328	349	0.92
Cytoplasmic	350	358	0.87
Transmembrane Helix	359	381	0.92
Non-Cytoplasmic	382	387	0.84
Transmembrane Helix	388	407	0.95
Cytoplasmic	408	418	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSKNIKIA IVLVTSLFFL WGVSYGLIDV MNKNFQNHLH ISQHESGFLQ FAYFGAYFII  60
   61 ALPAGYIANR FSYKMGIIFG LALYAIGALL IIPATNLASF HLFLFAFFIL ACGIGSLETS 120
  121 ANPYMTKLGD EKNASFRINA AQSFNGLGQF VGPIIGGVLF LSITKQEEGA SKEQIEAALV 180
  181 ANMGNVQLVY IGIAVIVILI LIAFVANKLP EGSAVSDDYK QKDDSKPIYV FKHRHFNLGL 240
  241 LAQFLYIANQ VAAGAFFINY VVEHNEGLKD AQGAYYFSIA LVAFMLGRIV STPLMKIIKG 300
  301 EKILGFYSLI NVLICFSLYF ASGFFSIVLL IALFFFMSIS FPTIFAVATK NLPLNQVKLG 360
  361 GSLLVMSIVG GAIMPIIIGF INDHYGTGAG YLAMAPLFLY VAWYGFIGSK VRKNAKDF