YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60266817, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMSYNIRYI ARWTKRQFLP LFICLLTASL IYSLLPLIGE QHLNSSNASF TNNITILLWH  60
   61 WPFGMRYNLT GDVCLRDYNI SGCILVDNQT LYESADLVVF HNFELMFHKQ QLPLHLYRPA 120
  121 KQRWVWLSLE APQNNGNLSP FKNIFNLTMS YHPGADITVP YGKLLLRTNP GLDVIVPKSK 180
  181 RYEACWVISN YKKWHKRSEV FQELTKSLNV QLYGSFGQKP LPKEALLPTI SRCYFYLAFE 240
  241 NVQSPHYITE KLWRNAFQAR TVPVVLGPPR TDYEAVTPPK SFIHVDDFKS VKALSEYLRG 300
  301 LIKDPEKYNE YFSWQKKYVV KLYTDWRERL CNICPINGQF PAQKVYGDLG AW

Type	Start	End	Confidence
Cytoplasmic	1	17	0.89
Transmembrane Helix	18	39	0.85
Non-Cytoplasmic	40	352	0.96