YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165893, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	38	0.92
Cytoplasmic	39	55	0.82
Transmembrane Helix	56	75	0.96
Non-Cytoplasmic	76	95	0.86
Transmembrane Helix	96	120	0.88
Cytoplasmic	121	128	0.87
Transmembrane Helix	129	149	0.95
Non-Cytoplasmic	150	186	0.95
Transmembrane Helix	187	210	0.89
Cytoplasmic	211	220	0.90
Transmembrane Helix	221	240	0.94
Non-Cytoplasmic	241	393	0.98
Transmembrane Helix	394	415	0.94
Cytoplasmic	416	425	0.89
Transmembrane Helix	426	447	0.94
Non-Cytoplasmic	448	476	0.92
Transmembrane Helix	477	498	0.87
Cytoplasmic	499	520	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELSSVDWS RAQFALTALY HFLFVPLTLG LSFMIAIMET IYVKTKNERW KKITKFWLSL  60
   61 FAINFAIGVA TGIIMEFEFG TNWANYSWFV GDIFGAPLAV EGIMAFFLEA TFFAVMFFGW 120
  121 DKVSKGFHLL STWCVAIGSN LSAFWILVAN GWMQYPVGMS FNPDTARNEM QSFFEVALSP 180
  181 VAISKFLHTI GSGYVISALF VMGISAWFML KGRHIIEAKK SLVVGASFGL VCSIFLFFSG 240
  241 DESAYRVTQT QPMKLAAMEG VYQGEHRAGL VPFGILNPKK TIDNNESVFL FDITIPYALS 300
  301 ILGNRDPNSF VPGIEDLIYG NESKGIEPMQ NRIDRGKIAI QALKDYKLAK ENNDTIAMAN 360
  361 HKSILETHFK DFGYGYLEKP SDTIPPVALT FYSFHIMVAL GSFFFLLFIV TLYLTMANDI 420
  421 EKFRKVLWVC LLSIPLGYIA AEAGWIVAEV GRQPWAIQDL LPVHIAATQL GKVNVQISFW 480
  481 IFAVLFTALL IAEVKIMLTQ IKKGFDAHAG HTPLMGKGEK