YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60499142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.61
Transmembrane Helix	15	33	0.72
Cytoplasmic	34	73	0.86
Transmembrane Helix	74	92	0.90
Non-Cytoplasmic	93	96	0.82
Transmembrane Helix	97	119	0.89
Cytoplasmic	120	135	0.87
Transmembrane Helix	136	158	0.88
Non-Cytoplasmic	159	163	0.71
Transmembrane Helix	164	184	0.89
Cytoplasmic	185	190	0.80
Transmembrane Helix	191	212	0.89
Non-Cytoplasmic	213	264	0.95
Transmembrane Helix	265	284	0.93
Cytoplasmic	285	309	0.93
Transmembrane Helix	310	331	0.92
Non-Cytoplasmic	332	339	0.74
Transmembrane Helix	340	358	0.96
Cytoplasmic	359	382	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQSYSWAY SLVDSSQVST FLISILLIVY GSFRSLNMDC ENQEKDKDGN PTASGSFNNA  60
   61 NSNNSIQTID STQALFLPIG ASVSLLVMFF FFDSVQVVFT ICTAVLATIA FAFLLLPMCQ 120
  121 YLTRPCSPQN KISFGCCGRF TLAELLSFSL SVMLVLIWVL TGHWLLMDAL AMGLCVAMIA 180
  181 FVRLPSLKVS CLLLSGLLIY DVFWVFFSAY IFNSNVMVKV ATQPADNPLD VLSRKLHLGP 240
  241 GMGRDVPRLS LPGKLVFPSS TGSHFSMLGI GDIVMPGLLL CFVLRYDNYK KQATGEVPGP 300
  301 ANMSGRMQRV SYFHCTLIGY FVGLLTATVA SRIHRAAQPA LLYLVPFTLL PLLTMAYLKG 360
  361 DLRRMWSEPF HAKSSSSRFL EV