YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76258618, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	51	0.92
Non-Cytoplasmic	52	66	0.83
Transmembrane Helix	67	87	0.92
Cytoplasmic	88	96	0.88
Transmembrane Helix	97	117	0.96
Non-Cytoplasmic	118	126	0.73
Transmembrane Helix	127	148	0.90
Cytoplasmic	149	155	0.87
Transmembrane Helix	156	177	0.93
Non-Cytoplasmic	178	183	0.81
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	215	0.82
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	244	0.93
Transmembrane Helix	245	267	0.92
Cytoplasmic	268	285	0.89
Transmembrane Helix	286	307	0.93
Non-Cytoplasmic	308	316	0.70
Transmembrane Helix	317	339	0.87
Cytoplasmic	340	349	0.79
Transmembrane Helix	350	370	0.93
Non-Cytoplasmic	371	381	0.81
Transmembrane Helix	382	402	0.75
Cytoplasmic	403	423	0.72
Transmembrane Helix	424	445	0.68
Non-Cytoplasmic	446	588	0.57
Transmembrane Helix	589	612	0.77
Cytoplasmic	613	625	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPMTTTTS SPTATTVRID YAVMLDQRSK VLILIGVLLG LFLSALDQTI VSTALPRIVA  60
   61 DLQGIELIGW VSTSYLLAST AMVPIYGKLS DIYGRKYVLL FGIVVFLLGS LLCGLAADMT 120
  121 QLVVFRGLQG FGAAALTSTA FAIPADLFAP AERARYMGLF GAVFGLSSVV GPFIGGLLTD 180
  181 NLSWHWVFFV NLPLGVIALG FIVAKLPRLH SGLMPAIDYA GAATLLLTVI PFLLALTLDK 240
  241 NDYPWTSPLI LSMFAVSAVG LVLFLLIERR AESPILPLHL FRIPTFTLTA LIGVTVGATL 300
  301 FAAIFFLSLY LVNVLGVSAT AAGTTLIPLT LSLVVGAMVS SQIVQRTGNY KWVIIVGMAI 360
  361 IVGSLWWLTT LTPDTSIWMV RLRMIALGLG LGPSMPILNL AMQNAVPRTD LGAATASRQF 420
  421 FQQIGQVVGS AVFGALLTGV LTTSLSTSLA PIQAQLPPDL AARFDSSALR NGMSAGEGAS 480
  481 GEVVDPAVRI EQAIAEQFAV RRDLITRALR DADPAAIATL RSDPQLPAQQ KAMLEMVETL 540
  541 PAAAREQALT QVLARLDEAE QTARAEGRAL GQQISTALKN AFTDSVTTIY RYAVWLAVIG 600
  601 LILALFIPQL PLQRSYGQDL PPLME