YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76167036, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.97
Transmembrane Helix	68	89	0.91
Non-Cytoplasmic	90	121	0.89
Transmembrane Helix	122	142	0.93
Cytoplasmic	143	150	0.79
Transmembrane Helix	151	170	0.95
Non-Cytoplasmic	171	176	0.81
Transmembrane Helix	177	198	0.94
Cytoplasmic	199	206	0.85
Transmembrane Helix	207	228	0.94
Non-Cytoplasmic	229	252	0.84
Transmembrane Helix	253	276	0.80
Cytoplasmic	277	296	0.76
Transmembrane Helix	297	319	0.92
Non-Cytoplasmic	320	336	0.69
Transmembrane Helix	337	357	0.86
Cytoplasmic	358	365	0.58
Transmembrane Helix	366	385	0.93
Non-Cytoplasmic	386	390	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPHCRRSA GTTPRLHGAE VHPATAARSG RGNGMSVEVP SSRGQQSPWL TLRTRGLSFR  60
   61 IDRRVPPVLT LALLATITAM VINIGVGAYP IPPLDVIRTV LGLPTGNEDY SFIVNVLRLP 120
  121 RMLVAALVGM ALGVSGAIIQ GLTRNPLADP GILGISAGAS LSAVTLIVVV RNVPSGVIPI 180
  181 AAFGGAVTVA TLIYLLAWRG GDSPIRLVLV GIGLGAICSA ATTLMITFGD IWDVQRALVW 240
  241 ITGSVYGRSW EEFWPLLPWI VIFVPLAFFL ARDLNALNLG EEVAQGLGIP VAWRRGLLLL 300
  301 TAVALAAATV AAAGTIGFVG LMAPHIGRRL VGPDHSGLLP TAGIIGALLV VLADLVGRTL 360
  361 FSPIELPAGL VTAAIGAPFF IGLLWRQQKR