YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76166721, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDRSGCRS DSRGDIVANT IKQPLNRATG WRAIGDLLTR QRGALRLYQW LWLVLCIVGA  60
   61 LSIALPPILT RPIIYYANAV VRFDMARYGP IYQPVGPNLT GMDIAIADAT EALRLSTLAR 120
  121 ADVRFGLPNF RVEYLLQQPG EVLVRGVADN ATEAKLLADA GAAELVRQIR AAGGREILRN 180
  181 MLGWQLWQAL NGTTPPADDR FALLLRDILR LEALPLSRPI EPFSTPRTLS DLSGEEISDV 240
  241 ARALESRYDL WRFAINTRNA TLDALCGSAG LTDTATREAT LRDCAATNPS AAAELAARDR 300
  301 TIAQLRSIEA ALTYMIREAG ARFNADQESA AFRIPAALPA APEPRYEIPL TALAILFGTA 360
  361 LGLGGIALDR SAGVLPKLQE LWQYRELIRN LILRDLRARY KGSALGYLWT QIAPLGMMLV 420
  421 YVIVFSFLLP NGLAMFPVFV IVGLLPWNYT AEAVLSGTRS IIDNAALVKK VYFPREVLPL 480
  481 VAVGSSLLNF ILSLPMMALV IIVVQLATLG RLNLSWSIVY LPVIMALQTI FLAGLALLLG 540
  541 AGAVFFRDVV HLIGIVINIW FFLTPIIYPL STISEGLAAR LIRWFNPLAS IIEFYREIIY 600
  601 GNPVPVGLIP TPGVPALSAM LRVGLTGLII LAFGYWVFQR TSRHFGEEL

Type	Start	End	Confidence
Cytoplasmic	1	47	0.96
Transmembrane Helix	48	69	0.89
Non-Cytoplasmic	70	347	0.94
Transmembrane Helix	348	368	0.88
Cytoplasmic	369	406	0.88
Transmembrane Helix	407	425	0.88
Non-Cytoplasmic	426	432	0.53
Transmembrane Helix	433	451	0.70
Cytoplasmic	452	479	0.57
Transmembrane Helix	480	509	0.76
Non-Cytoplasmic	510	517	0.58
Transmembrane Helix	518	542	0.85
Cytoplasmic	543	548	0.44
Transmembrane Helix	549	572	0.82
Non-Cytoplasmic	573	617	0.67
Transmembrane Helix	618	638	0.94
Cytoplasmic	639	649	0.92