YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57236937, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.91
Transmembrane Helix	12	31	0.93
Cytoplasmic	32	40	0.91
Transmembrane Helix	41	63	0.90
Non-Cytoplasmic	64	83	0.94
Transmembrane Helix	84	108	0.86
Cytoplasmic	109	122	0.84
Transmembrane Helix	123	147	0.87
Non-Cytoplasmic	148	183	0.93
Transmembrane Helix	184	205	0.84
Cytoplasmic	206	224	0.88
Transmembrane Helix	225	245	0.76
Non-Cytoplasmic	246	265	0.70
Transmembrane Helix	266	288	0.92
Cytoplasmic	289	301	0.88
Transmembrane Helix	302	323	0.84
Non-Cytoplasmic	324	342	0.75
Transmembrane Helix	343	366	0.84
Cytoplasmic	367	373	0.75
Transmembrane Helix	374	394	0.93
Non-Cytoplasmic	395	400	0.71
Transmembrane Helix	401	424	0.88
Cytoplasmic	425	461	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQFFQDFL MLSQAHTITT LAMLCVVFYA LKKMRDIKIN FSLRMLFALL MGLGFGFALQ  60
   61 YLANFPDAKE ASNILWYSET KHWFAFVSSV FVAFIKMLVV PLVSICIIKV IIEIDKNIKI 120
  121 SSLLGISLFW ILFSTAIAAT LGIFLGYSFD LGSNFAIYEG NKQIREIQTF SNIILGLIPS 180
  181 NIIAAINKEN IIAIVIFSFF IGISAKKISK KEEYEQAFKS FHNFILTFYN IMMNMTATVI 240
  241 RFMPYAVVCM MANVLLSNGF EAIKTAGLFI MLIYIAMLIM FGVHFLLLAS QGLNPIKYAK 300
  301 KAFPVWLFAF SSRSSLGTLP MTTSTLQNKF GVNSAIANFV ASIGTTTGLN GCAGYFPALA 360
  361 AVFVAFATHT HIDFTFALMI VLVAVIGSLG IAGVPGSATM AASIMLAGIG FGNNFVMLSL 420
  421 ILAIDPIIDM ARTASNVSGA MTSALCTAKN LKALDKEIYN S