YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149209143, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTHNVFLL AVTLFTTLSL VPALKFDVDF VDWNLNTNRL ATNPLEYTGN RDKTNHTKSP  60
   61 TNWRFPYYTI FLDRFVNGDP TNDDINGTYY EQDMTSNQLR HGGDLQGVLD SLDYIQGMGV 120
  121 KGIYIAGSPF INAPWGADAY SPLDLTLLDK HFGDIKMWQK TIQAIHDRGM YVIIDQTMAT 180
  181 MGDLLGFEGH LNDSTPFTEK EHKVVWKSSR RYLDFDIGND YNETCNYPVF YNENGFPETA 240
  241 ETLSKLKGCY NSDFDQYGDI EAFGVFPDWK RQLAKFASVQ DRLREWHPSV MARLKVFSCL 300
  301 AIQMLDFDGY RIDKAMQVTL EAQAEWSSAM RACAKEVGKD NFMVVGEITS GNVLGSVYLG 360
  361 RGRQPDMKPD LTTALSLKGS TDKKYFLREP GNSALDGGAF HYSVYRYLTK FLGLQGNLQA 420
  421 GFDLPTDDWA TFWNDMLQSN DFYNANTGEF DPRHLYGVTN QDVFRWPGIK QGTERWNLGF 480
  481 FIITLLLPGA PLVFYGEEQE FYVLDNSAEN YVFGRQAFSP TPAWMQHACY KQDNEVYVDW 540
  541 PVEKSRTGCT DITVSYDHRD PSAPLRNMMK HMFQMREQIP SLEHGWLVQK LANQTRFELL 600
  601 RGSSSPSEFG IWGMARGLMI PAQKANESEP YVWLVYHNEA VEKTYTFDCN SQAEHVAFVA 660
  661 PFDSGDKVVN LFDKSDVLTL GSSAVKNGFT GSASAGCISS ITMKPYEFRA YVPDGKFVEI 720
  721 TPMITGFIPG PSDNPGKHDS SFDSTFADGR LDLRLEFSVE MADCDSITKA ITILTTTKDG 780
  781 EGTGSSARIT QVTCGLIQNP TKRDLVGFVP SLFFWSAKLT SLADGIHKVV VENAPAKKTG 840
  841 STTAARDVFL FRFGKLNNPV VWPQVANYST TLVSGTKDAM SITHSAPGAT KWRYTTNWGT 900
  901 MWSDWQPYTG EQTVSISPMV WSGTAKQQWE GTHVTVQYHS APLGSSSIKQ HGDLNWGTPR 960
  961 RLPHVFLHGP FNKWGYDAGV LNTMALAGAG LWEKHFFYEW PANFQFNIWG INPDGQPDAT1020
 1021 FIYGDVDNDG VADRLPPSSL ANNVVNITSG PPMPYWSWKI QFDDTNLTIK KVPQGHIAVQ1080
 1081 VILMFLLATG SVILAAVSGW IYVAGFYKVK VNKSGFSKKK GFPLKLNLSS VNLMSREKEK1140
 1141 GMGMEMATVT PSPMVSLTPA PGGAAAAAGK DGKRRKVLIA TMEYNIDDWK ISIKIGGLGV1200
 1201 MAKLMSTALP HCDIIWVVPV VGDVEYPVDT PAESMFVNIM GSSYEVKVQY HYHENITYVI1260
 1261 LDAPVFRTQT KADPYIARMD DIESGILYAA WNSCIAEAIR RFSPDIYHIN DYHGAAAPLY1320
 1321 LLPQTIPVCL SLHNAEFQGL WPMRTPEESK EVCEVFGLAP EIVTQYVQYG AVFNLLHAGA1380
 1381 SYLRLHQRGF GAVGVSKKYG DRSLARYPIF WSLKNIGQLP NPDPSDRDDW DPSQAAEQQQ1440
 1441 PEDIQIDEEA EAKRGDLRRQ AQEWAGLNVD PDADLFVFVG RWSLQKGVDL IADIFPSVLE1500
 1501 KYPKTQLIAV GPVIDLYGKF AALKLEKLMQ KYPGRVFSKP EFTSLPPYIF SGAEFALIPS1560
 1561 RDEPFGLVAV EFGRKGALGV GARVGGLGQM PGFWYTVEST SPQHLLYQFE HAITSALKCK1620
 1621 TKKRALMRAW SAKQRFPVAQ WRMQIDSLYD QSIRIHNKEA AKKKSGGRSG GLFPLSPSVQ1680
 1681 SPNPNTRLIG SNSPLSPIPG SSAGPPSPGA DASRTRSLIG PTPTSPGLMS PYGAPDDGPR1740
 1741 LSAPRFPWTD LPSSNNRDST ISVMTTDSTG FRAQSEGAEG DMLGMPTPPP KSFYQQSRNS1800
 1801 SMLSLKDVVG ERHDFKLQKV DQNFTDSNEE FYYEFSAMLD DNLTAKNSTT EMCIESFLKK1860
 1861 SEKEWFARYR NAKLGISRDA SRSRPGSPSG SRPQSRGGDS RNTSVVSRGR ARHRSASRSG1920
 1921 LHIVDNSDES QTSPWTDDEF LLGDGYKAPT GIKKFLSRRV GDWPIYSFFL VFGQIISINS1980
 1981 YQIVLLTGET SQEPAKLYTT AGTYCATSVI WFFMSRYFKS VYALSIPWFF FGLAFLCLGV2040
 2041 APFIAEWSVR GPLQDAATAF YAAGASHGAI AFALNFGDEG GAPTRQWVTR ALVVTGFAQV2100
 2101 YSLGLWYWGT LVANGSYSVS GFIGATAVPR AVVICIPICF ILWAIGIIVY LGLPDFYRQS2160
 2161 PDTIPGFYIS LARRKIVPCF FAMVIIQNYW MSAPYGRNWA FLFSSQFVPG WGVVLLAIFF2220
 2221 LLGLWSVILY ALSRLADEHT WLLPMLAIGL CAPRWAQMLW GVSGMGMYIP WIPNPVAGAV2280
 2281 ISRCLWLWLG LLDNIQGVGF GMMLLATLTR THVLAVLMGG QVFGSAFTML ARATSPNRLI2340
 2341 PTVTFPDFSE SIGAGLSQPW FWACLGFQLL IPLAFSKVFR KEQVSKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle