YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238059, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.71
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	56	0.72
Transmembrane Helix	57	79	0.85
Cytoplasmic	80	95	0.72
Transmembrane Helix	96	117	0.76
Non-Cytoplasmic	118	119	0.59
Transmembrane Helix	120	136	0.81
Cytoplasmic	137	143	0.65
Transmembrane Helix	144	166	0.73
Non-Cytoplasmic	167	189	0.86
Transmembrane Helix	190	212	0.89
Cytoplasmic	213	227	0.92
Transmembrane Helix	228	247	0.95
Non-Cytoplasmic	248	254	0.69
Transmembrane Helix	255	271	0.96
Cytoplasmic	272	284	0.75
Transmembrane Helix	285	306	0.86
Non-Cytoplasmic	307	324	0.88
Transmembrane Helix	325	348	0.77
Cytoplasmic	349	366	0.58
Transmembrane Helix	367	395	0.65
Non-Cytoplasmic	396	404	0.32
Transmembrane Helix	405	427	0.89
Cytoplasmic	428	428	0.37

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAFFIFLST LVLLFWRPWN LPIWVFSSLG AFFVFIFQLV DFKDACFVFS LVWDSSLTLV  60
   61 GLIILSFSLE ALGFFDFIAS KILYFSREKN QEKIYISTKK MMLFLLIFVF FLSAFFANDG 120
  121 AILIITPIII ALFSTLKDCK NHAFILSSFL LSLSFLCDAS SNALVISNLT NIITANYFKI 180
  181 EFLEFAKNMF LPNFFVLLST IVTVFVLYVR VLPKRLEFKL IKKEQISLKL FFLCIVFLFL 240
  241 FVISFFIGEI FNIKISFFAL LWAGIFWLII LKIQGKKSIK ILFEAPYGVL LFSFGLYMVV 300
  301 FALHKIGVSE ILVKSYAFLM QDKSGIFGVA LISAFGSSVF NNLPMVLIGD LALKEYFENF 360
  361 SFDSLMIYAH LLGVNIGPKL TPIGSLATLL WLGVLARKGI NISFWQYCKF GFLITLPVLV 420
  421 FSLFALIV