YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLFLFSSL LDASHTFSYF FHIGLVALIA VIVAMMATRS MQLVPRGMQN LGEAFLEGVL  60
   61 SMGRDTMGSE KGARKYLPLV ATLGIIVFFS NIIGIIPGFH SPTASLNLTL SLAIIVFVYY 120
  121 HFEGIRAQGF VKYFAHFMGP IKLLAPLMFP IEIVSHLSRV VSLSFRLFGN IKGDDLFLMV 180
  181 ILALVPYIAP LPAYVLLTFM AFLQAFIFMI LTYVYLAGAT VVEEGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.85
Transmembrane Helix	18	38	0.94
Cytoplasmic	39	75	0.87
Transmembrane Helix	76	96	0.94
Non-Cytoplasmic	97	102	0.69
Transmembrane Helix	103	122	0.88
Cytoplasmic	123	132	0.75
Transmembrane Helix	133	156	0.63
Non-Cytoplasmic	157	175	0.54
Transmembrane Helix	176	197	0.74
Cytoplasmic	198	198	0.28
Transmembrane Helix	199	222	0.77
Non-Cytoplasmic	223	226	0.46