YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166860, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIKIFLVV VVFTALVYWG VEPYAHSVMK PHVAPANFDF AVEDTTFAKG IVEAKELALK  60
   61 DAQASGDAKR IESANKELEK AKEELSKVET LWADVAKIDF AKGDAKKGKE FFENNCFACH 120
  121 GVKEDGIAAN ITDSSMGVIP PDLSAAGAIF DEKFLAALIM HPALALKVDH KFGDAFIMTA 180
  181 YNKDTSGESE EATNANIANV IAYLKDVSVK FEANEDATIK KDVEAKYAKM ENSAQKAALM 240
  241 EKDIKFAKDK ATFIEACGRC HDMKYDSFFT PSNQNDLKTY LGSVPPDLSM MIRSRGEQYL 300
  301 HDFINNTQKL LPGTAMPRVG LTEAAQAKVV SYIDQVGDSK KEERKTTGIY VMIFFVILSI 360
  361 FAIGWKRSVW SKLH

Type	Start	End	Confidence
Signal Peptide	1	27	0.80
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	346	0.97
Transmembrane Helix	347	365	0.94
Cytoplasmic	366	374	0.75