YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237949, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPNILAIF RMVLAPLLFF LLIHHFENIH QSWINYFAAL TFSLAALSDF FDGYIARTWK  60
   61 QTTKLGGILD PLADKMLVLA AFLGLLLTGK ANEWVIYIIL VREFFITGFR VVMISENLNV 120
  121 NASFAGKLKT AFQMTAIGFL IMEWIGGEIL LYIALILTLY SGFEYIYTYI KAQKKGEK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	26	0.95
Non-Cytoplasmic	27	32	0.85
Transmembrane Helix	33	55	0.88
Cytoplasmic	56	71	0.80
Transmembrane Helix	72	101	0.69
Non-Cytoplasmic	102	134	0.46
Transmembrane Helix	135	169	0.67
Cytoplasmic	170	178	0.67