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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67922986, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSYSAHTL PQQKQSWHTY SVAKTLETLG TNPQSGLDTE NAAQRQQHYG RNEIEESAGR  60
   61 SNWEILLDQF TNIMLIMLIV VAIISGILDI VELRNSGTTK SGLPFKDTIA IFSIVILNGL 120
  121 LGYLQETRAE KALAALKKLS SPQVQVIREG KRQEVDAPLL VPGDIILVEA GDTLCADGQI 180
  181 VEGSHLQIRE SALTGEAHAV EKNILTQGLQ EDTPIGDRVN MVFTGTEVIQ GRAKAVVTGT 240
  241 GMDTELGKIA EMLQSVETEE TPLQRRMTQL GNVLVTGSLV MVALVVVGGT LKAGWGLLQE 300
  301 LIEISLSMAV AVVPEGLPAV ITVTLALGTQ RMVKRHALIR KLPAVETLGS VNVICSDKTG 360
  361 TLTQNKMVVQ EVETLEGNYQ VTGTGYEPVG EFICSEAKSS IRCSRFGALE ALLFTGVLCN 420
  421 DAHLSQEGND WNIMGDPTEG SLLALAGKAE LQQSVLEKQY ARVGEFPFTS ERKRMSTICQ 480
  481 GSQTGERLPS WQSQGDHQYL LFTKGSPELI LERCQYYQQG KRVHPLTEEQ KEQVLRGNNG 540
  541 MAKRALRVLG LAYKPLEQIP DATEAEEAEQ GLVWLGLVGM MDAPRPEVKA AVAKCRAAGI 600
  601 RPIMITGDHQ VTAQAIAQQL GIIQAEDHIL GGRELEKLSQ PQLEEEVERV SVYARVSPEH 660
  661 KLRIVQALQK RNKFVAMTGD GVNDAPALKQ ADIGIAMGIT GTDVSKEASD MVLLDDNFAS 720
  721 IVAATEEGRV VYSNIRHFIK YILGSNVGEV ITIAAAPLIG LSGVPLIPLQ ILWMNLVTDG 780
  781 LPALALAVEP ADPHIMERPP SSPQESIFAR SLGSYIVRIG IIFSIVTITL MRWAFNDAQQ 840
  841 PGHDPESWKT MVFTTLCIAQ MGHAIAARSS TRLAIEMNPF SNLYLWAAVI VTTILQLMLV 900
  901 YVAPLRAFFN TRMLTGEQLV ICLLFSSLMF VWVEFEKIIL RLYRKFKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle