YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62078545, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNKDEAER CISIALKAIQ SNQPDRALRF LEKAQRLYPT PRVTALIESL NQKSQSAGDQ  60
   61 SQPTDTTHTT TRKTSGTETP SANGEAGGGE STKGYTSEQV AAVKRVKQCK DYYEILGVSR 120
  121 SASDEDLKKA YRKLALKFHP DKNHAPGATE AFKAIGTAYA VLSNPEKRKQ YDQFGDDKNQ 180
  181 AARHGHSHGD FHRGFEADIS PEDLFNMFFG GGFPSSNVHV YSNGRMRYTY QQRQDRRDNQ 240
  241 GDGGLGVFVQ LMPILILILV SALSQLMVSS PPYSLSPRPS VGHIHKRVTD HLNVAYYVAD 300
  301 TFSEEYTGSS LKTVERNVED DYIANLRNNC WKEKQQKEGL LYRARYFGDT DMYHRAQKMS 360
  361 TPSCSRLSET MKSLENFW

Type	Start	End	Confidence
Cytoplasmic	1	242	0.64
Transmembrane Helix	243	268	0.75
Non-Cytoplasmic	269	378	0.83