YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145360829, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKLWIPRF ILITLLFISS RVNSQCEFSF TGRNKVFHFN LASSIRNYPH GVLSEDGFYK  60
   61 VEANSSVLWF QLCDVLIFNH DPPRCVGCED CGGPSHCGTS CSALVSENVR GYDVCTSLGH 120
  121 ASSTKVDIID KEDPGKGVIV QMSTGNRNQN CSLSVSVICQ KTKVDGPLTL AKSGTCQYAT 180
  181 QLRHPAGCAA AISGHSSGWG WFSTLLIIIL CLFGAYLVGG AVYRYFSLGI RGIDVIPNMD 240
  241 YWATVPHSIQ SCFGSLFSRF GGSIRGQQTS YSQVNF

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	200	0.98
Transmembrane Helix	201	223	0.88
Cytoplasmic	224	276	0.81