YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|100059101, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.59
Transmembrane Helix	21	41	0.89
Cytoplasmic	42	51	0.69
Transmembrane Helix	52	72	0.81
Non-Cytoplasmic	73	98	0.88
Transmembrane Helix	99	122	0.91
Cytoplasmic	123	134	0.76
Transmembrane Helix	135	154	0.95
Non-Cytoplasmic	155	174	0.88
Transmembrane Helix	175	197	0.92
Cytoplasmic	198	226	0.95
Transmembrane Helix	227	248	0.91
Non-Cytoplasmic	249	264	0.83
Transmembrane Helix	265	286	0.85
Cytoplasmic	287	300	0.75
Transmembrane Helix	301	322	0.90
Non-Cytoplasmic	323	334	0.76
Transmembrane Helix	335	353	0.77
Cytoplasmic	354	359	0.54
Transmembrane Helix	360	380	0.82
Non-Cytoplasmic	381	385	0.58
Transmembrane Helix	386	409	0.69
Cytoplasmic	410	422	0.55
Transmembrane Helix	423	445	0.88
Non-Cytoplasmic	446	446	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLIYTVIAI AVLILMIARY KVYPFLVLII VSLGLGLAVG MPMDKIVKSF EGGTGGTLGH  60
   61 IAIVVGLGTM LGKMMAESGG AERIATTLID WFGEKNIHWA MMFVAIIVGL PVFFEVGFVL 120
  121 LIPIAFNVAK RTGKSLLVVG LPMVAGLSVV HGLIPPHPAA LLAVQQYGAD IGKTIAYGLI 180
  181 VGVPTAIVAG PLFALTISKF VKLPEHNPLA SQFVETRAAG ETRELPSFGI TLFTILLPVV 240
  241 LMLVGSWADL VFAPKSLPNS LLRFAGNSDV ALLIAVLVSF FTFGKLQGFN REQIQKFCGD 300
  301 CLAPIAGITL IVGAGGGFGG ILRDSGISQQ IVATATHAHL SPLLLGWFVA ALIRLATGSA 360
  361 TVAMTTACGI VAPIAAASGV TVRPELLVLA TGSGSLIFSH VNDGGFWLIK EYFGMTVGQT 420
  421 FKTWTLLETI ISVLGLTFTL ALSAVL