YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67154131, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	36	0.57
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	219	0.70
Transmembrane Helix	220	240	0.89
Cytoplasmic	241	248	0.84
Transmembrane Helix	249	273	0.87
Non-Cytoplasmic	274	280	0.81
Transmembrane Helix	281	301	0.94
Cytoplasmic	302	310	0.75
Transmembrane Helix	311	333	0.94
Non-Cytoplasmic	334	361	0.92
Transmembrane Helix	362	385	0.89
Cytoplasmic	386	392	0.77
Transmembrane Helix	393	414	0.76
Non-Cytoplasmic	415	421	0.77
Transmembrane Helix	422	444	0.92
Cytoplasmic	445	447	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSSRKVSC RKTGARAFHA AASTGVPLVV MGSSVAQTPR PCPAGAGQAV ALYGERLCLP  60
   61 IMGPFPAVYP GACPAPAEFF RRRPDYGGSY VAARPHLAGV VPIARHGHPG ALPAHAARAD 120
  121 RRAAAVVRLS GLARRGERAG TGGRQQPPAL PAAAAGAAGG GGDGLCRGYR CRLLGYRRGV 180
  181 AAVPAGVAGF RRLADATADR PSGARGGRGM SFDWHGAWQA LVQHPLFAFG ITLGTYQLAV 240
  241 AAYEKTRWVF LQPVLVSMLL VIGVLSVCGV DYASYRDDAR ILTLFLGPAT VALAVPLFLN 300
  301 LKRIRLLFWP VVLTLLAGGF FTTLLGVGLA WLFGTERLML MTLAPKSVTS PIAMLVSEQI 360
  361 GGVAGLAAVF VLITGILGAV CGPVLLRRCG VRHPAALGMA LGLTSHAVGT SRALQEGEEC 420
  421 GAFAALGMSL MGVFTAILLP LSVAMVA