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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67087768, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSCNTGHR DMALCLTLRK GLFHDRHRAV ERPGPDPRPG HPEYPVPAHP QPLRAAHPRL  60
   61 RGPQSRPLQQ SPARAHAAVR RRPPRRPPRR TGSPVPEERL PALPGTRPRR PAVPQRLAGG 120
  121 AARTGTAHRA HPGTAERVGH PAPQGGDRAD RTDPHQGLRP ARRGALLLPR HGFLHRPRRP 180
  181 RRRLRQPAPV VRAASRLRED RPPLHRRHRP RPAQARIRRL HPAHGQGLPG ADHRRGHRAP 240
  241 GGTGHPGRDG RRPAAGLPVR PPHGAPGQRT LPMPATPQAG RRAARRGRRE PRRAAHRTAG 300
  301 SGRRHAGRRS PRTVPPPGLA EHPGGPRRRA TADRRGPAPR AVQRHAQALR PRAVRPQAGP 360
  361 AADGRGFPRR RADAFPATDQ PPADRPRPPE HRGRLRDHPG RPLPGHRPGH RRAQADHRAA 420
  421 AATGAPRQPA DPAAGQRADP AVPDPPAAEP ARSAGLLRRH RPLQAVQRLL RLRQGRRGTA 480
  481 RPGPLPGRTD RPAVRFPRPH RRRRLPAGAD LPRLATAPGP PAGGIPDALP APLPQGAPGG 540
  541 RPLRQPRPPG PPARVPAAQP VAGRRPPVSR SLYATERRAT RRAGLRCQAA GQGPARQQPG 600
  601 GDRHPPAGAG AGRLHLIHAA PGYVRASPAP ARSPPGRRKT EGAGPIRRRT PVVTENFMQD 660
  661 FLRNLSIRAV VTTTLICFTL LIGLVAALGY TGTDMANRAL EDRTRTATRI DLLRQVDTLR 720
  721 LKVFAHLEAY GKMSSVGLVG MVERQRQEVE LKELLGTAGT SLTAFKALPP FAEEDGRQRL 780
  781 EKAAADLEES LAALDRQLLA WKEDDSGTFD QLEDDMIFKR GPQVAQGLAE AMAFLESHGA 840
  841 RQLDDYHASL EGFAIVGGVA LAIALFLILA LRAMLMGFVV RPVHEAVEHV QRLARADLSQ 900
  901 PIPITSNNEI GQLLRTLCEM RLSLARIVTS VRAGSGSILV GAQQIASGNA DLSSRTEQQA 960
  961 ASLEETAASM EELTATVKQN ADNARQASAL ANDASGTAGQ GREVVGRVVE TMREISDSSA1020
 1021 QIAKIVGVID SIAFQTNILA LNASVEAARA GEQGRGFAVV AGEVRNLAGR SAEAAREIKA1080
 1081 LIESSGKRVG DGSQLVEQAG RTMEEVVRAV QRVTDIIDEI SAASHEQSEG IAQVNTAVAQ1140
 1141 MDEVTQQNAA LVQEASAASA SLAEQALHLE EAVAVFQLAM EAPHAARQEI PERNDAAPEQ1200
 1201 RPALPRAAAS PALSVAGGQW EAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle