YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67085942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.84
Transmembrane Helix	6	24	0.88
Non-Cytoplasmic	25	40	0.83
Transmembrane Helix	41	62	0.89
Cytoplasmic	63	76	0.78
Transmembrane Helix	77	95	0.93
Non-Cytoplasmic	96	113	0.80
Transmembrane Helix	114	137	0.80
Cytoplasmic	138	148	0.82
Transmembrane Helix	149	169	0.79
Non-Cytoplasmic	170	237	0.80
Transmembrane Helix	238	260	0.74
Cytoplasmic	261	279	0.68
Transmembrane Helix	280	297	0.55
Non-Cytoplasmic	298	316	0.67
Transmembrane Helix	317	337	0.85
Cytoplasmic	338	354	0.80
Transmembrane Helix	355	374	0.91
Non-Cytoplasmic	375	402	0.70
Transmembrane Helix	403	423	0.89
Cytoplasmic	424	466	0.70
Transmembrane Helix	467	487	0.80
Non-Cytoplasmic	488	498	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSNVFLFL FLPLFLGLYY LSPARYRNLL LLTASYVFYA WWRIDFLGLF AAVTVFNYWI  60
   61 GLRIGAAGVR TQSAQRWLTL GVVVDLCVLG YFKYANFGVD SLNAIITSFG VEPFVVTHIL 120
  121 LPIGISFYVF ESISYIIDVY RGDTPATRNL VDFAAFVAIF PHLIAGPVLR FRDLVDQFNH 180
  181 RTHTLDKFAE GCTRFMQGFI KKVFIADSLA PIADHCFALS DPTTGDAWLG ALAYTAQLYF 240
  241 DFSGYSDMAI GLGLMIGFRF MENFNQPYIS QSITEFWRRW HISLSTWLRD YLYISLGGNR 300
  301 GTTFQTYRNL ILTMLLGGLW HGANWTFIIW GAWHGTWLAI ERALRIDAAP KTIRPLRWVF 360
  361 AFLLVMVGWV IFRAENLDVA WRMYAAMFSF GDWTLSDLNK AQLTSLQIAT LLLAYVVIAV 420
  421 YGIRQFYAQP LTGAPKAKAN DQADAPQGIV HASSGTLAYS QAIDIPALAT RVAVLLLFAA 480
  481 SVLKLSAQSF SPFLYFQF