YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116608996, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVNSEQTTR PAAARPPHAG SPAAGAAVAP PRPGSDAEKA AALRKMKLLA LGLLIVMAVI  60
   61 FVVAFALQKQ YPWLEYVRAA AEGGMVGALA DWFAVTALFK YPMGIKIPHT AIIPRRKDQI 120
  121 GASLGEFVET NFLSEQVVQE KLASVDIARK AGAWLSGPGG AERVAKEGAA VIRGAFKVLN 180
  181 DDDVQAVIES MVRKHLLTPP WGPPVGRLAE RIFADGHHHT LVDLLVDRTV DWVRDNHETV 240
  241 SRLVSDRSPQ WVPQFVDGLV GDKVYVEILK FTKAVQADPQ HQVRQSIDTY LASLAQDLQH 300
  301 DPVMIARAEG IKAQVLGDPE VRELASRTWG TIKAALLGAV DDPHSELTVK FKAAVHDFGT 360
  361 RLVVDPELAG KVNAWIGDAA GYLVKTYRSD IAGVITDTVA RWDAEETSQK IELQVGKDLQ 420
  421 FIRINGTVVG ALAGLAIFTL AHLAFG

Type	Start	End	Confidence
Cytoplasmic	1	47	0.98
Transmembrane Helix	48	67	0.97
Non-Cytoplasmic	68	78	0.83
Transmembrane Helix	79	99	0.82
Cytoplasmic	100	420	0.97
Transmembrane Helix	421	444	0.87
Non-Cytoplasmic	445	446	0.80