YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66963846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAETRPTG GGTTGGNAAG EVAYRPRPAG VVPPAQNNSQ KAPTTAAGNG RRPRRHHAEG  60
   61 LEAGKRSTRI ILWILLAGAL VLYGFPFLYL LFTSFKTPID TIAVPPTILP REWTLENYAN 120
  121 ALGRSGVLAS FINSAQTAII STLLSLILAV PAAYGITRYK TPSGRVFIMA ALVTRMVPPV 180
  181 AIGIPLASMM SSVGLSDTPI ALSIAHTTIS LPLSIWLMSS FFEAVPKDLE EAATVDGCSR 240
  241 LGALWRVVIP VVSGGIAVTA IFAFLASWNE FLFALLMTAI RSQTTPVVIA NFQTQFGLDW 300
  301 GSMTALAAVY SIPVILLTLL LQRKIVAGMT LGAVKG

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	134	0.95
Transmembrane Helix	135	156	0.91
Cytoplasmic	157	165	0.87
Transmembrane Helix	166	189	0.83
Non-Cytoplasmic	190	201	0.74
Transmembrane Helix	202	222	0.91
Cytoplasmic	223	242	0.93
Transmembrane Helix	243	266	0.91
Non-Cytoplasmic	267	299	0.93
Transmembrane Helix	300	321	0.91
Cytoplasmic	322	336	0.93