YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66868008, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIPDTSAPL PVTAAPVTPD PENAPPASTK SNARRRSGRR APARRTLTYA VLVVGVSATL  60
   61 LPFAWMFLGA FKTQGELLRR PITWWPEQPT LDNFLMWFNE LHIGTFFLNS VVVAVFTVLG 120
  121 NLLFCSMVGY ALAKMDFPGK RFLFLLVMVM LMVPGVVTFV PLFVMVSKLG LVSTYPALIL 180
  181 PFLAAPMGVF LMRQFIMGIP DSLIEAARID GAGELRTFLR IVMPLCGPPL ATLGILTFLG 240
  241 SWNNFLWPLV VAQTEDMYTL PVALSLYSTG QNATDYGLLL AGSVLVITPI ILLFVSLQRY 300
  301 FIQGVAATGI K

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	68	0.92
Non-Cytoplasmic	69	102	0.97
Transmembrane Helix	103	125	0.88
Cytoplasmic	126	141	0.77
Transmembrane Helix	142	165	0.92
Non-Cytoplasmic	166	174	0.81
Transmembrane Helix	175	197	0.89
Cytoplasmic	198	216	0.98
Transmembrane Helix	217	239	0.93
Non-Cytoplasmic	240	275	0.93
Transmembrane Helix	276	297	0.91
Cytoplasmic	298	311	0.87