YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71002552, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.98
Transmembrane Helix	73	93	0.91
Non-Cytoplasmic	94	101	0.74
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	161	0.98
Transmembrane Helix	162	183	0.88
Non-Cytoplasmic	184	212	0.88
Transmembrane Helix	213	237	0.91
Cytoplasmic	238	253	0.89
Transmembrane Helix	254	276	0.89
Non-Cytoplasmic	277	292	0.88
Transmembrane Helix	293	312	0.94
Cytoplasmic	313	321	0.80
Transmembrane Helix	322	342	0.91
Non-Cytoplasmic	343	370	0.80
Transmembrane Helix	371	391	0.80
Cytoplasmic	392	401	0.86
Transmembrane Helix	402	424	0.92
Non-Cytoplasmic	425	436	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQQSSQDQ PAGLSESTAL PPASSDPPQR QSWSSTGCAL PPTTEKPPSA PIEPTPAKDT  60
   61 PTIQPHSKHA THLFTLSYLV FFSIFGTLAR LGLQALTFYP GAPVITGVLW PNVGGSLLMG 120
  121 FFLEDKNLFR EEWSQPPPRN PSEDSDAARQ YAQNHKSVKK TIPLYIGLTT GFCGSFTSFS 180
  181 SFIRDVFLAL TNDLPDPSVS SITSRNGGYS FMALLAVLLT TVALSLSALI CGAHLALAFD 240
  241 GFTPSFPFRP TRRVIDPLFV LLGWGCWLGA VFLAIWPPDR SGSSINAPDT WRGRAVFAIV 300
  301 FAPLGCLLRY YLSVYLNPRV PAFPLGTFTV NIFGTIVLAM CFDLQRVDGV GTVIGADARS 360
  361 APYAILTSCQ VLQGVMDGFC GCATTVSTWV AELNGLSRRR QAYVYGVGSV AVALGFFVVI 420
  421 VGSLGWTRGF VDPVCT