YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159129948
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSARFLRV PRPETFLYVM SLETGASLIT LSLLLNKISG LYGLLALLTG YHLSPVQLSM  60
   61 YLYSLIALGL TAYLFPHIRK QSPLQCLALA WLYLLDTVIN AAYTAAFGVT WFLVISQHYD 120
  121 NGTAKGPGSD TISQTAGFTN PKYSSSSTNA NSARSPDGLT NAVTQPESFQ SIVFICLLWI 180
  181 IRIYFVFVML AFARQKLRLY VAIPRHTQLP THSRNTSIAS VASVADIDRE PFSPYSPDGQ 240
  241 GWQGRLGRLM IGLGRSYWLG EDEDGAWLDS LDRKFRARGQ ELPGPLERER RRRSGTGPPQ 300
  301 PSQATVQAAA LQQPIPENLK MHDWTDGR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	35	0.92
Non-Cytoplasmic	36	56	0.78
Transmembrane Helix	57	77	0.90
Cytoplasmic	78	88	0.86
Transmembrane Helix	89	113	0.84
Non-Cytoplasmic	114	170	0.96
Transmembrane Helix	171	192	0.91
Cytoplasmic	193	328	0.99