YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71001552, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.98
Transmembrane Helix	14	32	0.94
Non-Cytoplasmic	33	39	0.73
Transmembrane Helix	40	61	0.94
Cytoplasmic	62	84	0.88
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	142	0.97
Transmembrane Helix	143	162	0.94
Cytoplasmic	163	173	0.79
Transmembrane Helix	174	195	0.90
Non-Cytoplasmic	196	213	0.85
Transmembrane Helix	214	236	0.87
Cytoplasmic	237	242	0.78
Transmembrane Helix	243	264	0.86
Non-Cytoplasmic	265	275	0.85
Transmembrane Helix	276	298	0.90
Cytoplasmic	299	306	0.83
Transmembrane Helix	307	326	0.92
Non-Cytoplasmic	327	331	0.62
Transmembrane Helix	332	351	0.51
Cytoplasmic	352	429	0.54
Transmembrane Helix	430	450	0.87
Non-Cytoplasmic	451	468	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAYASSLS RRETWRLLVL AGAGIGIIVN SLQGDGAPLI ASIAFSAVAF ALTFSLIRWL  60
   61 GPVFMRAGLK GKDMAKPRRP EIPETMGAVC AVVYLLALIF FIPFAFYKDI VAATSGGGNR 120
  121 DVVLEIAHVE NGRFLHRFPH SKLASYLSGL LSLQCIVILG IGDDLLDIRW RHKVLIPAFG 180
  181 AIPMLIVYFV DFGVTHVVVP VPLQPYLGTF VDLGWLYYVY MAAIAIFCPN AINMLAGING 240
  241 VEVAQSLVIA VLLVANDLLY IAPTTPFPHP ATDSHLFSLY FLLPFIGVSV ALLCHNWYPS 300
  301 KVFVGDTYCY FAGMVFAVVG ILGHFSKTLL LLFIPQIFNF LYSTPQLFHI IPCPRHRLPK 360
  361 FNAMSGLLDA SVTEWTVPPG PLVATGLEIL HRMRLIRITK NEEGEIVEST NLTILNLWLI 420
  421 WMGPMREDRL AWHMVMVQTA CGALGLFVRH RLALLVFQQD NRAFRYGV