YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71001478, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVPSASAF SLPLPSWQQP ASVRVARYEA KKRKKHSDDW GADNGDGEGE TTDGASEIAP  60
   61 IAPSLTLSPE EAHQYRVAGL SFDQELPGGL FPHAPAKSEL PKKESRGDIL ESLSSLSPPI 120
  121 YPPQSSAYQG NLRLQHLAVI TSILHRCLLQ GDYIRAGRAW GLILREEFAG SPIDVRTDGR 180
  181 WGIGAEILLR RGRQAAENAP GIQPTGDGHE SGGGHVSRPY FTRKGFEDAK HYYERLIVQH 240
  241 PYRKSAPDAI CSLHFYPAMF GLWIYVVQEE STLAREDIHS RHEDSPGDFS EDEELGQVSD 300
  301 GESVSKHRKH HLITSVRARE LEEAQQIAAR MDEILVSPPY SDSPELLELR GMLSLWIGDL 360
  361 FVSCVPHQEE DEYDSDGRSS VREDTDHLHD SIQARRERRL AMEKRQSEIL KSREFFEKAR 420
  421 QRGRSVASTL EHFHIDDSAS MASSGMGF

Type	Start	End	Confidence
Signal Peptide	1	18	0.85
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	448	0.99