YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66852832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLSYIASG ISSFVVVTLS LFALGQKVPR AAFFARCLAA YGSLLLCACY GVIASILLRL  60
   61 VGYGRVSQWA TARSFKWVMR YTTGVQFDII QGAEHLSTRP AVFIGNHQSE LDVLMLGHIF 120
  121 PPYCSVTAKK SLKHIPFLGW FMALSRTVFI DRANRETAMK AFDGAAEEMR KYRQSVFIFP 180
  181 EGTRSYSEKP ELLPFKKGAF HLAVKAGVPI VPIVAENYSH ILSPRNMRFN PGVIKLKVLP 240
  241 PISTEGLTAA DVDRLTKTAQ ESMLKALLEL SDQDRDEIDS DVKKATSTAV EI

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.62
Transmembrane Helix	6	25	0.88
Cytoplasmic	26	36	0.55
Transmembrane Helix	37	58	0.85
Non-Cytoplasmic	59	292	0.67