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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71000922, gi|...
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGKSSRSN SSQTETAAAT GAYPSAGGYE TPAPHTHHDA ASEGRSVTNK PKRRKNRHRK  60
   61 RRNRRQSFLA PEESHNGAAA SGADADAMIA GDQPYSRPAL PFYNLGRDLS STSLESEALL 120
  121 DHRNQPTMRP RRESRLAQSF RPGSMTIPSR SIDLASRGTP SGTRVFQAGD DSDGSDGADD 180
  181 HTPLIRPASG HHNNKSWYGT DAKASPFASR QRRTSVQSAS SRCSPRGLAT PDPDRDYDIN 240
  241 NPPSIPSSPK LGGEMNYDDA VVTGADFDFA LAKSIDNRNQ AGSRPNDMVI DVDGRSTQQK 300
  301 PSTQSSPVSP HLSPHEALRR RRTVALPVEE DVCFPIEEAS ELAEEDARRT SREDGRRRRR 360
  361 TKEWPDLSVL EEWSREEKEE RNGVLRAKKI SEPVLIEGRL RPQYRVWRRE EDEAPYRFTY 420
  421 FNEEFQSTIH AQSISELVQP GGSFRELFIP DPPELEDSSD EEDFEDENNH SDPVTDSNHD 480
  481 GQDNARAEDH RPAQAGGHNV NAANGPKAQH NTSIISEGMS EARASVEASP ARKVSTPKPK 540
  541 KFGPRPTFWL DVLSPTDAEM RVIAKAFGIH ALTAEDIMMQ EAREKVELFR SYYFVNYRTF 600
  601 EQDPNSENYL QPVNMYIVVF REGILSFHFS QTPHPANVRR RIRQLMDYLI LSSDWISYAL 660
  661 IDDITDVFGP LIQSIEDEVD EIDERIMKMH SPGRIDTSVN PANRREDGDD VPEPPAPGEM 720
  721 LRRVGECRKK VMGMYRLLSN KADVVKGFAK RCNEHWEVAP KSEIGLYLGD IQDHILTMTS 780
  781 SLTYYETLLS RAHSNYLAQI NILMNERQEQ TADVLGRLTV LGTIVLPMNI ICGMWGMNVK 840
  841 VPGQDIDNLW WFWSITGGLI LFAFASFLIA KRVYKIV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle