YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71000767, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGGKSGGKA SGSKNAQSRS SKAGLAFPVG RVHRLLRKGN YAQRVGAGAP VYLAAVLEYL  60
   61 AAEILELAGN AARDNKKTRI IPRHLQLAIR NDEELNKLLG HVTIAQGGVL PNIHQSRFRT 120
  121 LFSSSLYFLT NFQTFYQRRL LRVERVLARS FNCPIFLSFL FGFLNRRALV SHDVITGFWT 180
  181 GHNYGSVFHA FTYGCTLCLR ALNDTDSFLN EICLSETMGI LVNLTLSRHK GLYLQSFLQY 240
  241 TTKAFLHFNI NVQSNVQDRS FEVRY

Type	Start	End	Confidence
Cytoplasmic	1	145	0.61
Transmembrane Helix	146	164	0.67
Non-Cytoplasmic	165	265	0.56