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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|66852688, gi|...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTPRLRSA FPQTPQTLQR TREYNITPTR PKPRDVGLRR SPVKVPQTKA DAPLVPTGVI  60
   61 DAPSQRLYVV AFYIALNAWR VYESWTASDE LDSTWLFLKW TSIDGVFLFG LQALRIPWLE 120
  121 WAFPTTLAIF LIHVVGNMFL MFQIPVRILP CRTMVDLLTP RRFHSAVLNP DQIPFCLDSQ 180
  181 RSTVNLPIRV NQTDPVLIEL LRLDLSTGEN ETITISSKQL KQMKRQAGKK LSSSDAPEHR 240
  241 DILYPIRRTG IYRLQRVVDE SNLEVRMRSS DALVVSCPRA LIKNSHTHKC KGELSNLVLE 300
  301 VEGTPPLKIK YSRQVNKLDR GFSFQNIQPD HLRSPLLGQR SSGILFDAEQ PEITWAQSQT 360
  361 IEVPLNESLN VGGEWFYNIE EVHDGCGNIA NYSTLLDEAD RSSPKSLPHW HQFSVHERPR 420
  421 LSLSGCDDQH FIEVAKGEHV NLPLKFHPVG QGYDYDGPFS LGYSFRGNEL DERDSSDKVR 480
  481 QLSLKDLDQK PQIKESGWYM LNSISSQFCS GEILEPSSCY LHNPPEPELA LKYEKIFDKC 540
  541 ANNSVGLLLD LDLTGSPPFR LRYSIEHSKG VETKSLTVDG LRTQLDFTPS EAGFYRYRFL 600
  601 DIADTVYAPR SLKDKVPVLE QDVKPPASAH FLGSREVRRA CFGEPVSIDV SFLGESPWTL 660
  661 HYELAHNGKK SKHVLESHAE IATIVTERLV SGGEYNLVLT SVKDRSNCKR TLKDSIRIDA 720
  721 RSKPPHVSFG QIDKKRTVSA LQGAKVDIPL RLSGERPWTV NYRNLDDDSP AIEKTFWQEN 780
  781 SVLSVTQEGH YNLIGVTDSS CPGSVDQAAR DFEVSWIPRP HIAAVDGSPV VIGSPIEKRD 840
  841 VCQGEDDSVE LRLTGNPPYT IQCEQQRKMG RGTSSIRTRS LKTALHVTSM EMDTSEAGLY 900
  901 TYKFKEVGDS LYDYDPRSEP VLVTQRVNPL PSARFNSPGH IYGFCKEDVS GEESIPVTLE 960
  961 GVAPFFLEII IKHHSNAKPE VVSIPNISSN RYNLPIPRRY LNLGQHVVSI HKVRDARGCQ1020
 1021 RTFENDASTV RVAVSDVPTI IPLESKIDYC VGERLSFSLS GHAPFDVFYT FDGVSRKATS1080
 1081 RTTNFRRIAE RPGIFTITAV SDGASGKCKA HKNITKTIHE MPSVRISRGQ TSVVDIHEGG1140
 1141 EAELQFEFWG TPPFEFTYIR SSIPRKGKKS EVLDIKHDIS YEHRKTIKTS DEGTYEVVAI1200
 1201 KDKFCSFSSQ AQVEKPQKLL AGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle