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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71000599, gi|...
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPHSSAGVQ SWGQPLYAVY TGTGRADLSQ PLGQPDRQSE QPSMPVAQTQ GRPPALIDLT  60
   61 ANDGDVLERE PPAKRLKIDV HAGSVANDGS PASAGVGESK STPGATTSKP PSLSWRARPV 120
  121 WSFQSLLSEI PGSAEINGES AAGVVQDLKP PPPPSFSGPP WKFAPTDIIA SDSAGEQDGA 180
  181 SAKEVQTTPY HIETPSVAPV IRGEIFAAAL EKRQGHNMVT APSTFKPPPR VTLTDNKREA 240
  241 WLRDLANPNV PLRKLSRTIP HGIRGRVLLD QCLTKWVPVG RAVWLAKCVG ANEIRAFKRK 300
  301 GTSGALTIGL EAKWVRDWTA NVQQFLEGVI TSCGVADWKM KVTYAVNLTS RLFFEQLLDH 360
  361 DQYLEWFLTS LEAAPFNTLP VWLLMLGIYW SNILRYRKRG RRLAELLLDK LQLAIKSDSA 420
  421 PSLRPLIDRL SLHIRKLTLE HTSSMVLPQS WEKYKDLLSS CLNLNDNVHR TVFQILAERN 480
  481 ARVQKPPKCE GTTQQPPQQR VIQLFDSICS SHDITSVSAA SLRAIDDKAA LVLKLLEWAA 540
  541 TPFRYGVSRV YTGARLLRKW KIAGVDVDTC IISFLGESQM SDQLNMDNVY HIVSELVRSQ 600
  601 TFSVGKYLQW LMAKGVADFS RSSDHQPLSG DLALLVQLPV SRLPEHVHNL RNTLLHRAGV 660
  661 EPSKEASTIA ILKASIAERL PRIFGSVATS AVSCDPLPSD LTWTVKSELG QWIRRGVTEF 720
  721 GRDPRRAFQG LHSTTSAEHF ALTPGEFYTV RDILESFGDL SILADVLKQA TVCNDGIVLA 780
  781 SAADTVNYHF RSFCVIGATT DLFKRLVEAY ARLKRLGSTS LDLIFSLIDL GLRLPGELNT 840
  841 VALLRQDLSR IESKSSMAAP SPLSDHIPSS FNENDPLFLL KLDQLLSSAS GIDESTLDTI 900
  901 FNVLIKQLES SGGHAKFSVN EICRYLSYLR PFHPKRFDTM IVRWVCGLLR SSTGGILSQV 960
  961 LPPLIGVGCV TIQAFVFLVR RLLKSDNKIS NQRDLRIDLL QLLVPPPAGQ SRYFDLVTYR1020
 1021 FHLSRKEFLF KHPEEAFDII RDAIALIDSE SQEGNYRQVD LGHSAMVLLQ ILLTKNPESA1080
 1081 VRHCSEKLIG QHPSAVTVLT RALDSLLGLD SKAGGHLFTS NDTFIFIPID TGPATPDISV1140
 1141 AEKVIELTND FSLPFCQLKL QLLFNAESKG NVRNEIVDVM FKAAVADSRS RRSNWVGLVS1200
 1201 LMSHDAVRQV KCHDVGSIRF PD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle