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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|66852598, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKSKETLQ VKPLPRKGRS PSRSPRPKDR KKVPADTSSY GSEGVKDNNI FHLPSSDYKV  60
   61 LVLVTLVALV VRLFRIYQPS SVVFDEVHFG GFASKYIKGR FFMDVHPPLA KLLITLAGWL 120
  121 AGFDGNFDFK DIGKDYLEPG VPYVAMRLLP AVLGVLTVPL MFLTLKASGC RTITAVLGAG 180
  181 VVIFENGLIT QSRLILLDSP LVFFTALTAL AFTSFTNQQE LGPSHAFRGP WWFWLAATGL 240
  241 SLGATLSVKW VGLFTVAWVG SLTVLQLWVL WGDAQNVTPR LWFKHFFARV FCLIIVPLGI 300
  301 YCGMFAIHFL CLVNPGDGDG FMSSEFQATL NSKGMQDVPA DVVFGSRVSI RHLNTQGGYL 360
  361 HSHAHMYPTG SKQQQITLYP HKDENNVFIL ENQTQPLGPF GQVEGPYAWD NITTEYIQDG 420
  421 AVVRLYHAMT HRRLHSHDER PPVTDVDWQF EVSAYGYEGF PGDANDLFRV EIVKSKSDGE 480
  481 EAKKRLRTIE SKFRLVHVMT GCVLFSHKVK LPEWGFDQQE VTCARGGTLP NSLWYIESNH 540
  541 HPMLPEDAEK VNYRNPGFFG KFWELQKVMW TTNAGLTESH AWDSRPPSWP TLLRGINFWG 600
  601 RDHRQIYLLG NPFIWWSSTA AIVVYIVFKG IAVIRWQRSC GDYRNVNFKR FDYEVGTSVL 660
  661 GWAFHYFPFY LMARQLFLHH YFPALYFALM ALCQEFDFIA NRFKSFGLSS RPIIGKGLVA 720
  721 VFLALSIFTF TLYSPLVYGN PWTQDACKKV KLVSTWDFDC NTFYTDLGQY VTQFLNANPI 780
  781 ASSTPSAQVN PVPELPVQNS PVKEPPVAPP QQHHQEVHKE AQEASVTSQA QQPRGTMARV 840
  841 EYRDQHGNVL DEALVASLAR EGKVSFETRH ETRTRLEHAH EVEMIDGRIA PPHPDVEGQN 900
  901 PETVKDQEHQ AAGDSPASAA VGERSVKEPS SPEPKPASEA KEATQN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle