YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159127892
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	196	0.97
Transmembrane Helix	197	218	0.90
Non-Cytoplasmic	219	225	0.73
Transmembrane Helix	226	247	0.82
Cytoplasmic	248	263	0.88
Transmembrane Helix	264	284	0.92
Non-Cytoplasmic	285	302	0.92
Transmembrane Helix	303	325	0.89
Cytoplasmic	326	335	0.81
Transmembrane Helix	336	358	0.86
Non-Cytoplasmic	359	379	0.91
Transmembrane Helix	380	400	0.93
Cytoplasmic	401	493	0.70
Transmembrane Helix	494	516	0.90
Non-Cytoplasmic	517	523	0.82
Transmembrane Helix	524	551	0.76
Cytoplasmic	552	559	0.73
Transmembrane Helix	560	583	0.74
Non-Cytoplasmic	584	640	0.81
Transmembrane Helix	641	665	0.85
Cytoplasmic	666	682	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYPNLDRVS HSCHPDPSTP FSLHVRATSQ HSPSAAHQPD EVELDQLACH SNNRSNHRGE  60
   61 INTDIPHQAP TSFPSPSDLE SDSDSEDDTA GTRLLEHHRG RSSTQMKNKS RTVSKRRSKP 120
  121 SLTLATGTQN GSAGGEMNSN IEMRKRDTSL ESSGGRASRL MARQSFSLND DPPITPQTPA 180
  181 MATTSFANLP SSDRRNFLLL CVLYFLQGVP MGLATGSVPF LLKPYLSYGQ IGVFSLASYP 240
  241 YSLKLLWSPI VDAVWSQRFG RRKSWITPVQ VIAGLAMIYL GGHIEEMMVK AGANGGAGVW 300
  301 NFTYWWFLLV FFCATQDIAV DGWAITLMSP PNISYASTAQ TVGLTAGHFL SYTVFLAFNS 360
  361 KDFANRWFRT VPGEDGLLSL GGYLTFWGWA YLFVTICLAL MKKEDKTRER DSITDVYKSM 420
  421 WNILKLKNIQ TIIVIHLIAK IGFQANDAVT SLKLLDKGFG TDNMALVVLI DFPFEIGLGY 480
  481 YAGKWSTEYT PMRLWCWAFI GRLAAAVLAQ ATVMIYPSSE AVPFWYILVV IGEHVLSTFM 540
  541 NTVMFVAVSA FHARIADPAI GGTYMTMLAT VSNLGGTFPR YFILKLVDFF TVATCIPPAV 600
  601 PPAAEKLKGD LVTSAFSCAL EPDKNRCVNG GGVCETSRDG YYITNILCVL VGTVTFIMFI 660
  661 QPAVLKLQSL PLRAWRLSNG DR