YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66852489, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGPSIQDRT GEFQAILGQA QKRLATSKVG SQRQALLSDS QRRQAHAGTD GQGPSKRRSE  60
   61 FARRAAEIGR GITATTAKLQ RLAELAKRKT LFDDRPVEIS ELTYVIKQDL ASLNQQIASL 120
  121 QALTLSQHPK TNRSKADQEG EHNDNVVVML QGKLADVGAN FKEVLEVRTK NIQASRSRTE 180
  181 NFVSSVSSKS QVLDPQRSDS PLYIPSGRRT PQPGFQGGSS DLLTLDPSNP SPLGRPSFQT 240
  241 DQQLLVMEEA QTNNTYIQAR GEAIDAIERT ISELGGIFGQ LAQMVSEQSE MIQRIDANTE 300
  301 DVVDNVEGAQ RELMKYWNRV SGNRWLIAKM FGVLMIFFLL WVLIAG

Type	Start	End	Confidence
Cytoplasmic	1	324	0.88
Transmembrane Helix	325	345	0.95
Non-Cytoplasmic	346	346	0.89