YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66852478, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.81
Transmembrane Helix	51	72	0.87
Non-Cytoplasmic	73	122	0.74
Transmembrane Helix	123	142	0.51
Cytoplasmic	143	156	0.70
Transmembrane Helix	157	179	0.55
Non-Cytoplasmic	180	186	0.52
Transmembrane Helix	187	209	0.88
Cytoplasmic	210	217	0.46
Transmembrane Helix	218	242	0.78
Non-Cytoplasmic	243	251	0.48
Transmembrane Helix	252	273	0.88
Cytoplasmic	274	277	0.54
Transmembrane Helix	278	301	0.87
Non-Cytoplasmic	302	376	0.54
Transmembrane Helix	377	398	0.86
Cytoplasmic	399	404	0.48
Transmembrane Helix	405	425	0.85
Non-Cytoplasmic	426	475	0.50
Transmembrane Helix	476	496	0.71
Cytoplasmic	497	515	0.91
Transmembrane Helix	516	535	0.90
Non-Cytoplasmic	536	548	0.80
Transmembrane Helix	549	569	0.92
Cytoplasmic	570	593	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTTPSSHR PRKRRRYPTG SNNSLILEAE GGKSSPAFPL VSFLWAARAG VSQWLVLPLI  60
   61 LMVVGLFRWA VSLWGYSGFQ VPPMHGDFEA QRHWMELTIH LPMSKWYLYD LQYWGLDYPP 120
  121 LTAYHSWLLG KISGSVLDPS WFALDDSRGF EDPKLKVFMR GTVIASEYLV YIPAVVNFLR 180
  181 RYTRMQGVPA WSASIALVAI LLQPATILID HGHFQYNTVM LGLVVASLDA ILAGRMLWAC 240
  241 LFFVGALGFK QMALYYAPVM FAFLLGVCIF PRVRILRLLN IAIITILAFA LLFTPLLVAA 300
  301 TNADARDYLS ASAEPPLLQA LPIKLSKDSF LYAPVFQLMQ IIHRVFPFAR GLFEDKVANA 360
  361 WCAIHTFYKL HRFEASLLQR VSLGATLASI LIPCGIIFRH PRASLLLPTL ASVAWGFFLF 420
  421 SFQVHEKSVL LPLLPMTLLL ANDGGLSKDT RAWVGWANVL GSWTMYPLLK RDELRVPYFV 480
  481 MTGLWAYLMG LPPTSLETYR SRTPGGESRP VSEPRILTKL LHFCFYLAMI VWHVLDAFVP 540
  541 PPEGKPDLWV VLNVLIGAGG FGIAYLWCMW RLITQCWQID RKAAEEESRK KKE