YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66852427, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLTFGRFL SRSYPHSREG PTILSFRQQL IMEGTGLDDD QDRRTNQMTG VHDSPVLQPA  60
   61 SMEDMDAFYD TDEYADSSNR SYSPPASPPR LSRNPSFSYQ DDWETFPPLD KLTVFDLLDN 120
  121 FSLSQKLEKW QQAINVQREK VRKQREKLKS TSMNAKDRVV GEWKRRVPTA DEQLAKYRRR 180
  181 MSDGVKRLEK QWNATATVTL REKVSFIAGV LNIFVSGYLI GAYPEYFYIW FSVQLAYFMP 240
  241 IRYYGYHKKG YHYFLADLCY FVNMLCMLSI WVFPRSKRLF ISTFCLTFGN NAVAIAMWRN 300
  301 SMVFHSMDKV VSLFIHIMPP VTLHCLVHLT PAEVLRERFP AVYDIKFSKP GSSNHYSLLS 360
  361 MMLWATVPYM FWQLTYHFFI TVRRAEKIAA GRPTSFTWLR KSYAKTWIGK FVISLPESLQ 420
  421 SPAFMMIQYI YALLTMIPCP LWFRFRWASG VFLTALFVLS IHNGATYYID IFGKRFQKEL 480
  481 EELKKDVARW QGSPAGTTSS TLPILNNASS AGAGILEDSA SVHKDSDKSS LDKIPPLDSS 540
  541 AASTAIDGSN LAAAANTRER K

Type	Start	End	Confidence
Cytoplasmic	1	203	0.97
Transmembrane Helix	204	229	0.78
Non-Cytoplasmic	230	252	0.73
Transmembrane Helix	253	273	0.94
Cytoplasmic	274	278	0.76
Transmembrane Helix	279	298	0.91
Non-Cytoplasmic	299	311	0.67
Transmembrane Helix	312	332	0.67
Cytoplasmic	333	352	0.54
Transmembrane Helix	353	372	0.80
Non-Cytoplasmic	373	420	0.53
Transmembrane Helix	421	443	0.69
Cytoplasmic	444	449	0.40
Transmembrane Helix	450	471	0.78
Non-Cytoplasmic	472	561	0.45