YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70999832, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.51
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	237	0.61
Transmembrane Helix	238	272	0.61
Cytoplasmic	273	340	0.87
Transmembrane Helix	341	360	0.85
Non-Cytoplasmic	361	416	0.82
Transmembrane Helix	417	437	0.85
Cytoplasmic	438	447	0.73
Transmembrane Helix	448	468	0.92
Non-Cytoplasmic	469	483	0.79
Transmembrane Helix	484	506	0.86
Cytoplasmic	507	525	0.95
Transmembrane Helix	526	550	0.89
Non-Cytoplasmic	551	556	0.84
Transmembrane Helix	557	581	0.80
Cytoplasmic	582	730	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPFSILTLG IFVAGYITAR WDLVTRLYEL AIFAWDHGVV PRNVDNALRA GILFRNSPHP  60
   61 IARIFTLCGR STMHVLGSTN PQEPPSAFNP AHLHVTTHPS YKVPRIYCPP EANISVQVIM 120
  121 FHRPHPTRME YMSLDPISLA LGDKASIADK PEVVPSTIDA EEERDRAVRG KLVEKLKLHT 180
  181 VVKHMPSPKE QALPLIINQV NCAYEMGKLM EKNSHLIGIR VKRSMSVGER VVESATTLWD 240
  241 LFVLGVSYVF WQWIWPVATR VFIIGLVFHR TIAEVVLQIL EWRARPDAAA LKDISATAQQ 300
  301 VDIRLQQFCY WPIQYVKLRQ RKDDWESVTT SHPDYIRFYN SLWLVANDVI IGIALGSYII 360
  361 DNANWVAFQI NSVLTGWTVE GLQRTISWLM DWPAGLKLNN ELAAFLGDLF LWVIENWAGM 420
  421 HFLLLDLLFS FAKFGAACIA NLQPYLPHVI YVVGCSSFAG ASMPIALFSD LVSILTVHIY 480
  481 SFYVASARIF NWQLTIIISL FHLFRGKKRN VLRHRIDSCD YDLDQLLLGT ILFTVLFFLL 540
  541 PTVIVFYLTF ASARMLIISL KAALDTCLAF LNHFPLFALM LRVKDSRRLP GGIRFELREE 600
  601 QDRSLHPYSA VPYIHLESIP LSLRAMFDQY FQLGHRLRKH YLSPRVIFCL FTGRFVPPIH 660
  661 RRNLYSMQYS MLPAHRAGMA EVWSLLTQPR KTSSGSSGSS SMGGVTAANG LVRIPSGFGQ 720
  721 GDVRRRGYRY