YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GMT_ASPFC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.85
Transmembrane Helix	41	62	0.76
Non-Cytoplasmic	63	73	0.62
Transmembrane Helix	74	93	0.88
Cytoplasmic	94	111	0.75
Transmembrane Helix	112	132	0.81
Non-Cytoplasmic	133	137	0.57
Transmembrane Helix	138	157	0.70
Cytoplasmic	158	162	0.52
Transmembrane Helix	163	182	0.89
Non-Cytoplasmic	183	202	0.73
Transmembrane Helix	203	222	0.91
Cytoplasmic	223	236	0.79
Transmembrane Helix	237	255	0.92
Non-Cytoplasmic	256	273	0.76
Transmembrane Helix	274	295	0.93
Cytoplasmic	296	303	0.65
Transmembrane Helix	304	324	0.74
Non-Cytoplasmic	325	329	0.67
Transmembrane Helix	330	349	0.92
Cytoplasmic	350	382	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDKKTNEY TIEMDKLDHG NKDFEAPAPA VRPRGPPVAQ LANNPILPVL AYCGSSILMT  60
   61 VMNKYVLSGR DFNLNFFLLC VQSIVCIVAI QTCKVSKLIT YRDFNSDEAK KWFPITLLLI 120
  121 GMIYTGSKAL QYLSIPVYTI FKNLTIILIA YGEVLWFGGS VTGLTLFSFG LMVLSSIIAA 180
  181 WADIKHAVES SGDATAKVST LNAGYIWMLI NCLCTSSYVL GMRKRIKLTN FKDFDTMFYN 240
  241 NLLSIPVLLV LTFLMEDWSS ANIARNFPST DRNGILFAMI LSGLSSVFIS YTSAWCVRVT 300
  301 SSTTYSMVGA LNKLPIALSG LIFFDAPVTF PSVSAIVVGF ISGIVYAVAK IKQSAKPKTG 360
  361 VLPMSNPPVS ASSQSMRDSL RS