YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159126596
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQKVAQQS LRRRMYSPAC CLICLSRLTN NPAVAVQQPY AMRWSLMNSA SPAAVAMGRN  60
   61 VQKRHAASTT SQADASKILA QQRLNRPVSP HLSIYRPQIT WIGSSAHRIT GIALSGSLYL 120
  121 FATAYLAAPL FGWHLESASI AAAFGALPIA AKVLIKGTAA FPFVYHCLNG VRHLVWDLGR 180
  181 GISNQQVIKS GWTVVGLTVV SALTLALL

Type	Start	End	Confidence
Cytoplasmic	1	108	0.78
Transmembrane Helix	109	128	0.88
Non-Cytoplasmic	129	139	0.55
Transmembrane Helix	140	165	0.65
Cytoplasmic	166	187	0.72
Transmembrane Helix	188	207	0.79
Non-Cytoplasmic	208	208	0.72