YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159126685
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPMPLLLRQ SLRSSANFAR TSLPIRPQFL PAAGPNLQPA REIQRSFSVC VRCQFRSQSP  60
   61 LYSSPEKDTS KDDAATQQSK DGSSTLTPGD ESAKVEPDAE TQRPSPAAGE QDTLQGFYQD 120
  121 AKNEPKRESA EKKGLPSYLE ERRSQLSKQF TEMMDNLQSN IFVAGQRLND LTGYSAIEAL 180
  181 KKDIQLQEER LREARQRVRE AKNAYAAAIN RRSASQREVN ELLQRKHAWS AADLERFTHL 240
  241 YRNDHTNEVA EMETQEALSA AERESEEAAA QLSKSILSRY HEEQVWSDKI RRMSTWGTWG 300
  301 LMGVNVLLFL VFQIAVEPWR RKRLVKGFEE KVIEAIEKEK AINHIEILKP QPALTSTSPS 360
  361 SKEEAAEPTP TSTAAGDTPT TDESTPAATD ETITSEPVVW DSDPIPTFVT NITAEIATET 420
  421 TEDSAPKSAT INGVEPRKSQ LSRILPPLPP PTSLDSWRHT LNELFSDRSM VITQRDLTTV 480
  481 ALQSAAAGAA IMGLVIALIR PR

Type	Start	End	Confidence
Non-Cytoplasmic	1	294	0.78
Transmembrane Helix	295	316	0.88
Cytoplasmic	317	477	0.73
Transmembrane Helix	478	499	0.89
Non-Cytoplasmic	500	502	0.64