YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70997521, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSRTFVPR LSNSLAATSP ALVRLSGVRC HLQPSFRPTA SLRSSSQPHT MSIPTTMKAV  60
   61 LIEKTGGPEV LDFKTDHPVP TPQEGQLLVK NNISGINYID TYFRTGLYPA PKPEVLGREG 120
  121 AGTVVALGPG PNHYNFQVGD RVAWLSTGGY AEYTAVPAAK AVKIPDGISD EDVMASFLSG 180
  181 LTVLSLAKET YAVQKGDWVL LHAAAGGAGF LMTQILKSIG AHVIGTAGGP EKVELVKGLG 240
  241 ADHVIDYRSE EGKDWVKQVK EITGGRGVDV VYDSVGKDTW EGSLEVVKRK GTIVWFGNAS 300
  301 GPVPPLPLNK LSPKCVKVAR PQLFGYIETR EEFEFYVNEL FHLLQSGQLK VRIHKVYPLE 360
  361 QVQQAHIDLE GRKTTGKSLL KP

Type	Start	End	Confidence
Signal Peptide	1	30	0.92
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	382	0.99