YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70996004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.85
Transmembrane Helix	63	87	0.73
Non-Cytoplasmic	88	146	0.80
Transmembrane Helix	147	166	0.72
Cytoplasmic	167	176	0.67
Transmembrane Helix	177	197	0.85
Non-Cytoplasmic	198	201	0.54
Transmembrane Helix	202	218	0.72
Cytoplasmic	219	227	0.63
Transmembrane Helix	228	250	0.88
Non-Cytoplasmic	251	253	0.67
Transmembrane Helix	254	275	0.71
Cytoplasmic	276	289	0.51
Transmembrane Helix	290	309	0.65
Non-Cytoplasmic	310	332	0.84
Transmembrane Helix	333	354	0.91
Cytoplasmic	355	362	0.86
Transmembrane Helix	363	383	0.92
Non-Cytoplasmic	384	392	0.79
Transmembrane Helix	393	415	0.88
Cytoplasmic	416	431	0.85
Transmembrane Helix	432	457	0.81
Non-Cytoplasmic	458	632	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICPFPTTIL LLASIEVHQQ ASRSDSSFES LSSRTISMAP ARKETQSTNG SQRTKPRSRP  60
   61 VPFYLPLNVT LYVFLISNFV AAALAPIQDC DEVFNFWEPA HYLDHGYGLQ TWEYSPAYSI 120
  121 RSWLYVSAHA GVGKIVSIFS SDKTSEFYTI RFVLAAVCAA CETRLYSAIC RTLNPRVGLL 180
  181 FLIIVAFSPG MFHASAAFLP SSFTMYTSML GLASFLDWRG GQKTAQGIMW FGLGAIMGWP 240
  241 FAGALIIPLL LEEVAISFIA GTLGNLFVDI FKGIIRCLAI LGVEIAVDYL FFQKFAIVPW 300
  301 NIVAYNIFGG EGRGPDIFGT EPWTFYIKNL LLNFNIWFVL AVSAAPILVL QAIFRSQATN 360
  361 VQTLLRTVTL VTPFYMWLAI FTIQPHKEER FMYPAYPFIA LNAAISFHMI LSYVGSSNPK 420
  421 EIIGRLSPKV KLTMVMAVIL MAINAGLLRT LGMITAYNAP LKVMEPLQQL EMAQSGGFVC 480
  481 FGKEWYRFPS SYFLPNGMRA KFIKSEFRGL LPGEFPEAPS YSSLLRGTSQ IPAGMNDRNE 540
  541 EDLGKYVDIS QCSYLVDSSF PGRAATELEP DYVLDESEWE TITCKGFLDA SQSSALGRLI 600
  601 WVPDFPMLPA RFRRSWGQYC LLRRRNAKSE LK