YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66850389, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHLLQHGRA TVRRLSRRTS RSQRLQLRHH SKASPNPVPE KNSTSANASR SGATPSCTSP  60
   61 CSPNTSSPTN TPLAASTPAR SSPRTFFQAI QAGPIGRLAD SYARVQQRRP YATQVVSSIV 120
  121 VYLCGDLSAQ LLFPSESPAQ TSRVASEEKP ADSAEDGEGK AASSGGYDPL RTMRHLTVGV 180
  181 GSAIPSYNWF MFLHNNFNFQ SKFLSILTKV SVQQAVFTPV FNTYFFSVHS LLAGASLEET 240
  241 FERLKVALPV SISNSVKLWP AVTAFSFVYV SPPFRSIFAG VIAVGWQTYL SWLNQKAARE 300
  301 VEAEMAESDR SSHVLVSGSI SPSTTIKA

Type	Start	End	Confidence
Cytoplasmic	1	172	0.62
Transmembrane Helix	173	193	0.52
Non-Cytoplasmic	194	273	0.62
Transmembrane Helix	274	290	0.57
Cytoplasmic	291	328	0.57