YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66850303, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETSCSHNK RRSDPRNIKR LSGSLQCLAF PLPSFSLQYV RFRNKNFRVA RRCRLDPSFP  60
   61 EFRESDASSL EIIKSPQSLE PPPRLTNGLE KDRRSEDTPH NGTLDASAGA SQDIDNAIAD 120
  121 IGGNSLELGN KLRTLPAWIR SYEAANDEAE ASATARLLPP QPETGLGPRR ESRWKSFSKA 180
  181 IAYPLEPGLE EKLVTPEWLN QNHTDFSQPW RGQLEPSEDT EDPLKMKRRR QIWFKRFHRT 240
  241 LLKSPIVPLI FRLTIWCFSL TALALGGSIQ HLSDKYQHPQ GPSALMAIIV DAVALVYLIY 300
  301 ITWDEYTAKP LGLRSPAAKA RLILLDIFFI VFDSANLSIA FESLSTVSGA CTLAEINQQI 360
  361 SKKNNAICDR QIALACVLLV ALLAWLITFS ISVLRYDTPY SNKCAVLTVF LDNRLVERVA 420
  421 Q

Type	Start	End	Confidence
Cytoplasmic	1	248	0.91
Transmembrane Helix	249	269	0.88
Non-Cytoplasmic	270	282	0.77
Transmembrane Helix	283	303	0.92
Cytoplasmic	304	321	0.86
Transmembrane Helix	322	341	0.73
Non-Cytoplasmic	342	370	0.65
Transmembrane Helix	371	393	0.86
Cytoplasmic	394	421	0.67