YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66850178, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRGTAGY NLGHQNPFVG PGRADATSDP SPLDAIREQT SKIEDWLDTI SDPVKPYLPA  60
   61 IGRFLIVVTF IEDSLRIITQ WSDQLVYLRE YRKIPWGITH TFLILNVIAM SVCSFLVITR 120
  121 RHTEIAVAGL LGVVVTQGLG YGLIFDLNFF LRNLSVVGGL LMVLSDSWVR KKFVPAGLPQ 180
  181 LDEKDRKMYV QFAGRVLLIF LFVGFVFSGQ WSLWRVLVSL FGFVACVMVI VGFKAKWSAI 240
  241 ILVVLLSVFN VLVNNFWTLH PHHPHKDFAK YDFFQILSIV GGLLLLVNMG PGQLSMDEKK 300
  301 KVY

Type	Start	End	Confidence
Cytoplasmic	1	59	0.70
Transmembrane Helix	60	78	0.41
Non-Cytoplasmic	79	95	0.66
Transmembrane Helix	96	118	0.90
Cytoplasmic	119	124	0.64
Transmembrane Helix	125	145	0.81
Non-Cytoplasmic	146	148	0.76
Transmembrane Helix	149	169	0.78
Cytoplasmic	170	187	0.94
Transmembrane Helix	188	207	0.90
Non-Cytoplasmic	208	212	0.71
Transmembrane Helix	213	233	0.90
Cytoplasmic	234	239	0.77
Transmembrane Helix	240	259	0.94
Non-Cytoplasmic	260	272	0.81
Transmembrane Helix	273	292	0.92
Cytoplasmic	293	303	0.87